Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866481:139866500:[+] chr14:50196242:50196254:[+] nonBSJ supported CDS

circRNA 5':UUCCAACAAAGGUACGUCUU 3'


            ||| |||| ||||


target  3':CAGG-----UCCA--CAGAU 5'

 -8.30 12 RIC-seq
chrX:139866481:139866521:[+] chr14:50196214:50196254:[+] nonBSJ supported CDS

circRNA 5':UUCCAACAAAGGUACGUCUUCC---AGA------AAAUCCACGUCUUCCA 3'


            ||| |||| |||| ||| ||||| || |||


target  3':CAGG-----UCCA--CAGAUCCAAAUCUAUCACGUUUAGUA--AGUAGGA 5'

 -13.40 10 RIC-seq
chrX:139866481:139866529:[+] chr14:50196206:50196254:[+] nonBSJ supported CDS

circRNA 5':UUCCAACAAAGGUACGUCUUCC---AGA------AAAUCCACGUCUUCCAACCAAGCC 3'


            ||| |||| |||| ||| ||||| || ||| ||


target  3':CAGG-----UCCA--CAGAUCCAAAUCUAUCACGUUUAGUA--AGUAGGAUCAAACGA 5'

 -13.60 2 RIC-seq