Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865925:139865961:[+] chr9:131346643:131346682:[+] nonBSJ supported CDS

circRNA 5':AGC-CAAUAUAUGUCUUCCUGAAGAUCCACGU---CUUCCA 3'


            || | ||:||: || ||||| |||||


target  3':CCGAGGAACUCACGGAGUAUCG-CUCGGUGCUCCCGAAGGA 5'

 -21.40 1 RIC-seq
chrX:139865967:139865979:[+] chr9:131346643:131346658:[+] nonBSJ supported CDS

circRNA 5':UCCAUGU---CUUCCA 3'


            |||:| |||||


target  3':CGGUGCUCCCGAAGGA 5'

 -11.00 2 RIC-seq
chrX:139866063:139866110:[+] chr9:131337491:131337542:[+] nonBSJ supported CDS

circRNA 5':GUCUUCC-UGAAAA-UCUACGUCUUCCAAAAAA--GCCAUG-UCUUCCAGAAA 3'


            ||||| |:||| |||||:| :|||| ||| | |||| |||||


target  3':AAGAAGACAUUUUGGAGAUGUACGAGGUCUAGGACCGGGUCGAGAA-GUCUUC 5'

 -32.80 1 RIC-seq
chrX:139866106:139866152:[+] chr9:131337509:131337557:[+] nonBSJ supported CDS

circRNA 5':AGAAAAUCCACA----UCUUCCAAU-GGCCUCCAGGUCUUCCAGACUAUCCA 3'


            |||| || || ||||| ::|||| | :| :|||||| |||


target  3':ACUUUGAGAAGUUUAAAGAAGACAUUUUGGAGAUGUACGAGGUCU---AGGA 5'

 -28.70 1 RIC-seq
chrX:139866127:139866160:[+] chr9:131337064:131337096:[+] nonBSJ supported CDS

circRNA 5':GGCCUC--CAGGUCUUCCAGACUAUCCAUGUCUUCC 3'


            |||| || ||||| |:|| ||:|||:||


target  3': CGGAACAGUAACU-AGGUCAGGUA-GUGCAGGAGU 5'

 -28.30 2 RIC-seq
chrX:139866496:139866530:[+] chr9:131344060:131344089:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAUCCACGUCUUC---CAACCAA---GCCA 3'


            |||:|||: |||||| |||| |||


target  3': AGAGGGUU---------CAGAAGUAAGUUGUCCUUGCGG 5'

 -20.80 1 RIC-seq
chrX:139866550:139866587:[+] chr9:131344062:131344089:[+] nonBSJ supported CDS

circRNA 5':GUCUUCCAGAAAAUAUAUGUCUUC---CAACUAAGCUACGU 3'


            |||:|||: |||||| |||| || |||


target  3': AGAGGGUU---------CAGAAGUAAGUUG--UCCUUGC 5'

 -18.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:131337491:131337542:[+] target 1325796 chr9:131337506-131337507 G>A Developmental_and_epileptic_encephalopathy,_5 ClinVar
chr9:131346643:131346682:[+] target 1308199 chr9:131346665-131346666 T>A Neuromuscular_disease|not_provided ClinVar