Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865672:139865690:[+] chr14:72207683:72207713:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUU-------------CCAGAAAAAUCUG 3'


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target  3':UCAGAAAUCUCCGAAGUUUGUUCUUG--AGACA 5'

 -6.60 1 RIC-seq
chrX:139865672:139865694:[+] chr14:72207679:72207713:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUU-------------CCAGAAAAAUCUG-UGUC 3'


            ||||| | |||| |||| ||:


target  3':UCAGAAAUCUCCGAAGUUUGUUCUUG--AGACAACGU 5'

 -9.10 1 RIC-seq
chrX:139865672:139865729:[+] chr14:72207668:72207713:[+] nonBSJ supported 3UTR

circRNA 5':UGUCUUCCAGAAAAAUCUGUGUCUUCCACCAAAUCCAAGUCUUCCAGUAAA--UCUAGUU 3'


            ||||| ||| | |||| ||| || ||| |:||| ||||:|


target  3':UCAGAAA-UCU---------CCGAAGUUUGUUC---UUGAGACAA-CGUUUUGAGAUUAU 5'

 -12.90 21 RIC-seq
chrX:139865782:139865792:[+] chr14:72207709:72207719:[+] nonBSJ supported 3UTR

circRNA 5':CCAGGUCUUCC 3'


            ||||| ||


target  3':UGUCCAUCAGA 5'

 -7.70 18 RIC-seq
chrX:139866252:139866274:[+] chr14:72202065:72202086:[+] nonBSJ supported CDS

circRNA 5':ACAAAGCCAUGUCUUCCAGACUA 3'


            || |||| |||:||||| ||


target  3':GGUCUCGGACCAGGAGGUC-GAC 5'

 -24.40 1 RIC-seq
chrX:139866775:139866781:[+] chr14:72125131:72125137:[+] nonBSJ supported CDS

circRNA 5':AGUGUGC 3'


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target  3':CCACACA 5'

 -6.60 19 RIC-seq
chrX:139866775:139866781:[+] chr14:72125132:72125137:[+] nonBSJ supported CDS

circRNA 5':AGUGUGC 3'


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target  3':CCACAC 5'

 -5.90 2 RIC-seq