Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866295:139866339:[+] chr17:65343502:65343543:[-] nonBSJ supported CDS

circRNA 5':CUUGUCUUCCCUCA-AAUCC---AUAGCUUCCGAAAAAUCCAG-GUCUUC 3'


            |||| ||| ||||| |:|||| ||| |:||:


target  3':AAACACAAGCUUACAUUAGGAAGUGUCGAUCC--------GUCUCGGAGU 5'

 -18.20 6 RIC-seq
chrX:139866616:139866633:[+] chr17:65340829:65340846:[-] nonBSJ supported CDS

circRNA 5':CUCCA-GGUCUUCCAGCAU 3'


            |||| :|||:| ||:||


target  3':AAGGUAUCAGGA-GUUGUU 5'

 -16.60 1 RIC-seq
chrX:139866660:139866695:[+] chr17:65340823:65340852:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAUCUCCAC-GUCUUCCAGCAUCUCUGUGU 3'


            ||||| |||| |||:| ||:|| ||||


target  3':UAAGGUA----AGGUAUCAGGA-GUUGUUC--ACACC 5'

 -20.50 11 RIC-seq
chrX:139866660:139866696:[+] chr17:65340823:65340850:[-] nonBSJ supported CDS

circRNA 5':CUUCCAACAUCUCCAC-GUCUUCCAGCAUCUCUGUGUC 3'


            ||||| |||| |||:| ||:|| ||||


target  3':UAAGGUA----AGGUAUCAGGA-GUUGUU----CACA 5'

 -18.10 10 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:65343502:65343543:[-] target 427781 chr17:65343511-65343512 G>A Stankiewicz-Isidor_syndrome ClinVar
chrX:139866295:139866339:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC