Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865742:139865797:[+] chr6:117010563:117010617:[+] nonBSJ supported CDS

circRNA 5':UCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGG-UCUUC-CA--GUCA 3'


            || | ||||| || ||| ||| ||| ||||| | |||


target  3':GGA-CAAGAAG---AGAAAAA-ACAAAAGAUUCGACAUAAGGAAGAAGAAGAGAAGCAGA 5'

 -15.90 16 RIC-seq
chrX:139865745:139865797:[+] chr6:117010563:117010615:[+] nonBSJ supported CDS

circRNA 5':AGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGG-UCUUC-CA--GUCA 3'


            | ||||| || ||| ||| ||| ||||| | |||


target  3':ACAAGAAG---AGAAAAA-ACAAAAGAUUCGACAUAAGGAAGAAGAAGAGAAGCAGA 5'

 -15.50 1 RIC-seq
chrX:139866640:139866692:[+] chr6:117010552:117010600:[+] nonBSJ supported CDS

circRNA 5': GGCUUCC-AGCAUCUGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUG 3'


            | ||| ||| ||||| |||| ||||| ||||||||


target  3':ACAAAAGAUUCGACAUAAGGAAGAAGA----AGAGAAGCAGAUG--CGUAGAGAA 5'

 -31.70 19 RIC-seq
chrX:139866650:139866692:[+] chr6:117010552:117010596:[+] nonBSJ supported CDS

circRNA 5':AUCU--GCUCGUCUUCCAA---CAUCUCCACGUCUUCCAGCAUCUCUG 3'


            ||| ||| || |||| | |||| ||||| ||||||||


target  3':AAGAUUCGA-CAUAAGGAAGAAGAAGAGAAGCAGAUG--CGUAGAGAA 5'

 -31.60 1 RIC-seq