Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866214:139866237:[+]	chr12:52168119:52168137:[+]	nonBSJ supported	CDS	circRNA 5':CAGGAAAUCCGUGUCUUCCAGCAA 3' \|\|\|\|\| \|\|\|: \| \|\|\|:\|\| target 3':CUCCUUCAGGU-C----GGUUGUG 5'	-15.50	3	RIC-seq
chrX:139866232:139866255:[+]	chr12:52168120:52168137:[+]	nonBSJ supported	CDS	circRNA 5':CAGCAAGUCCACGUCUUCCAACAA 3' \|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\| target 3':CUCCUUCAGGU-C----GGUUGU 5'	-15.50	1	RIC-seq
chrX:139866232:139866260:[+]	chr12:52168118:52168137:[+]	nonBSJ supported	CDS	circRNA 5':CAGCAAGUCCACGUCUUCCAACAAAGCCA 3' \|\| \|\|\|\|\|\|\| \| \|\|\|\|\| :\|\| target 3':CUCCUUCAGGU-C----GGUUG---UGG 5'	-16.90	24	RIC-seq
chrX:139866232:139866264:[+]	chr12:52168114:52168137:[+]	nonBSJ supported	CDS	circRNA 5':CAGCAAGUCCACGUCUUCCAACAAAGCCAUGUC 3' \|\| \|\|\|\|\|\|\| \| \|\|\|\|\| :\|\|\| \|: target 3':CUCCUUCAGGU-C----GGUUG---UGGUCCG 5'	-18.20	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr12:52168114:52168137:[+]	target	3775072	chr12:52168119-52168120	G>A	Cognitive_impairment_with_or_without_cerebellar_ataxia	ClinVar
chr12:52168118:52168137:[+]	target	3775072	chr12:52168119-52168120	G>A	Cognitive_impairment_with_or_without_cerebellar_ataxia	ClinVar
chr12:52168119:52168137:[+]	target	3775072	chr12:52168119-52168120	G>A	Cognitive_impairment_with_or_without_cerebellar_ataxia	ClinVar