Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865425:139865444:[+] chr9:84304173:84304191:[-] nonBSJ supported 5UTR

circRNA 5':CCAGAUAAUCCUGAGCUUCC 3'


            ||| || |||:|


target  3':UGUCGUCCUC-ACGCGAGGC 5'

 -9.40 1 RIC-seq
chrX:139865425:139865460:[+] chr9:84304173:84304207:[-] nonBSJ supported 5UTR

circRNA 5':CCAGAUAAUCCUGAGCUUCCAGAAAAUCCA-CAUCUU 3'


            ||| || || ||| | |||| ||:|:|


target  3':UGUCGUCCUC-ACGCG-AGG-CGGUUAGCCGGUGGGAG 5'

 -16.90 2 RIC-seq
chrX:139865425:139865461:[+] chr9:84304173:84304208:[-] nonBSJ supported 5UTR

circRNA 5':CCAGAUAAUCCUGAGCUUCCAGAAAAUCCA-CAUCUUC 3'


            ||| || || ||| | |||| ||:|:||


target  3':UGUCGUCCUC-ACGCG-AGG-CGGUUAGCCGGUGGGAGG 5'

 -19.40 29 RIC-seq