Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865696:139865734:[+] chr17:29509525:29509560:[+] nonBSJ supported CDS

circRNA 5':UCCA-CCAAAUCCAAGUCUUCCAGUAAAUCUAGUUC-UUCC 3'


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target  3':UGGUAGGU---GGUUCAGUUUAUCGAAAAGA-CGUGUAAG 5'

 -20.90 25 RIC-seq
chrX:139866603:139866626:[+] chr17:29541521:29541541:[+] nonBSJ supported CDS

circRNA 5':UGUCUUCCUAUAUCUCCAGGUCUU 3'


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target  3':UC-GAAGAAC--AGAGGUCCAGAC 5'

 -22.40 13 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:29509525:29509560:[+] target 488814 chr17:29509525-29509526 G>A Hereditary_cancer-predisposing_syndrome|Cardiovascular_phenotype|not_provided|Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 1073116 chr17:29509525-29509526 G>C Neurofibromatosis,_type_1|Juvenile_myelomonocytic_leukemia|Neurofibromatosis-Noonan_syndrome|Gastric_cancer ClinVar
chr17:29509525:29509560:[+] target 1758359 chr17:29509525-29509526 G>GA Cardiovascular_phenotype|Hereditary_cancer-predisposing_syndrome|Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 996510 chr17:29509525-29509526 G>T Cardiovascular_phenotype|Hereditary_cancer-predisposing_syndrome|Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 996418 chr17:29509532-29509533 C>A Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 2011544 chr17:29509534-29509535 GA>G Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 1075677 chr17:29509534-29509535 G>T Neurofibromatosis,_type_1|Hereditary_cancer-predisposing_syndrome|Cardiovascular_phenotype ClinVar
chr17:29509525:29509560:[+] target 3237941 chr17:29509539-29509540 GC>G Cardiovascular_phenotype|Hereditary_cancer-predisposing_syndrome ClinVar
chr17:29509525:29509560:[+] target 2031060 chr17:29509541-29509542 TA>CT Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 2677233 chr17:29509542-29509543 A>AT Juvenile_myelomonocytic_leukemia ClinVar
chr17:29509525:29509560:[+] target 567780 chr17:29509542-29509543 AT>A Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 2744670 chr17:29509547-29509548 A>AGG Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 2632989 chr17:29509548-29509549 C>CT NF1-related_disorder ClinVar
chr17:29509525:29509560:[+] target 1759515 chr17:29509548-29509549 CT>C Cardiovascular_phenotype|Hereditary_cancer-predisposing_syndrome ClinVar
chr17:29509525:29509560:[+] target 404528 chr17:29509549-29509550 TTGG>T Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 1454346 chr17:29509550-29509551 T>A Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 1451180 chr17:29509550-29509551 T>TG Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 2856730 chr17:29509552-29509553 GTGGA>G Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 1712335 chr17:29509557-29509558 TG>T Neurofibromatosis,_type_1 ClinVar
chr17:29509525:29509560:[+] target 827194 chr17:29509559-29509560 GT>G Hereditary_breast_ovarian_cancer_syndrome|Hereditary_cancer-predisposing_syndrome|Cardiovascular_phenotype ClinVar
chr17:29541521:29541541:[+] target 3661733 chr17:29541522-29541523 AG>A Neurofibromatosis,_type_1 ClinVar
chr17:29541521:29541541:[+] target 1394572 chr17:29541524-29541525 AC>A Neurofibromatosis,_type_1|Cardiovascular_phenotype|Hereditary_cancer-predisposing_syndrome ClinVar
chr17:29541521:29541541:[+] target 1452028 chr17:29541528-29541529 GGA>G Neurofibromatosis,_type_1 ClinVar
chr17:29541521:29541541:[+] target 429817 chr17:29541529-29541530 G>T Neurofibromatosis,_type_1|not_provided ClinVar
chr17:29541521:29541541:[+] target 2507393 chr17:29541532-29541533 AC>A Neurofibromatosis,_type_1 ClinVar
chr17:29541521:29541541:[+] target 431585 chr17:29541536-29541537 GA>G Neurofibromatosis,_type_1 ClinVar
chr17:29541521:29541541:[+] target 1361244 chr17:29541540-29541541 C>CT Neurofibromatosis,_type_1 ClinVar
chr17:29541521:29541541:[+] target 2736512 chr17:29541540-29541541 C>CTA Neurofibromatosis,_type_1 ClinVar