Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866404:139866445:[+] chr22:40825654:40825710:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCAGC-CUA-----------CU-UGUGU---CUUC-CAACAAAGGUACGUCU 3'


            | ||: ||||| |:| || ||||: |||| || |||| |:||


target  3':AAGAGGUGGUCGAGGUACCCCGGUCCGGAGACACGUUAGAAGAGUAAC-UCCA-GUAGC 5'

 -28.80 6 RIC-seq
chrX:139866410:139866445:[+] chr22:40825675:40825710:[-] nonBSJ supported CDS

circRNA 5':UCCA-GCCUACU-UGU-GUCUUC-CAACAAAGGUACGUCU 3'


            ||| |||| || ||: :||||| || |||| |:||


target  3': GGUCCGGA-GACACGUUAGAAGAGUAAC-UCCA-GUAGC 5'

 -26.30 4 RIC-seq
chrX:139866413:139866445:[+] chr22:40825678:40825710:[-] nonBSJ supported CDS

circRNA 5':AGCCUACU-UGU-GUCUUC-CAACAAAGGUACGUCU 3'


            |||| || ||: :||||| || |||| |:||


target  3':CCGGA-GACACGUUAGAAGAGUAAC-UCCA-GUAGC 5'

 -23.50 1 RIC-seq