Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865646:139865701:[+] chr6:76566892:76566919:[+] nonBSJ supported CDS

circRNA 5':CAAAUACAGAUCUUCCAGCUAAUCCAUGUCUUCCAGAAAAAUCUGUGUCUUCCACC 3'


            |||:|| ||| | ||||| ||||


target  3':UUUUGUGACUAAAUG--------------------------AGACAAAU--GGUGU 5'

 -11.20 19 RIC-seq
chrX:139865712:139865755:[+] chr6:76566893:76566951:[+] nonBSJ supported CDS

circRNA 5':CUUCCAGUAAAUCUAG--------UUCUUCCAGAAAAAUCUAGAU---CUU------CCAG 3'


            |||||:|||| ||| ||| ||||| || ||| ||: |||


target  3':UGAGGUUAUUUU-AUCCUACUACAAAGUUUUCCUUUUGUGA-CUAAAUGAGACAAAUGGUG 5'

 -15.20 19 RIC-seq
chrX:139865713:139865755:[+] chr6:76566893:76566950:[+] nonBSJ supported CDS

circRNA 5':UUCCAGUAAAUCUAG--------UUCUUCCAGAAAAAUCUAGAU---CUU------CCAG 3'


            ||||:|||| ||| ||| ||||| || ||| ||: |||


target  3':GAGGUUAUUUU-AUCCUACUACAAAGUUUUCCUUUUGUGA-CUAAAUGAGACAAAUGGUG 5'

 -14.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:76566892:76566919:[+] target 8577 chr6:76566915-76566916 G>A Autosomal_dominant_nonsyndromic_hearing_loss_22 ClinVar
chr6:76566893:76566950:[+] target 8577 chr6:76566915-76566916 G>A Autosomal_dominant_nonsyndromic_hearing_loss_22 ClinVar
chr6:76566893:76566951:[+] target 8577 chr6:76566915-76566916 G>A Autosomal_dominant_nonsyndromic_hearing_loss_22 ClinVar