Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865759:139865811:[+] chr17:27493723:27493753:[-] nonBSJ supported CDS

circRNA 5':AUCA-GUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCA 3'


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target  3':CAGUCCAC-----------------GUCCAGUC--UCGGC--GAC-CGGU-GGA 5'

 -16.10 1 RIC-seq
chrX:139866331:139866345:[+] chr17:27419922:27419935:[-] nonBSJ supported CDS

circRNA 5':CAGGUCUUCCAGGAA 3'


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target  3': UCCACCAGGUCGUA 5'

 -12.30 1 RIC-seq
chrX:139866773:139866807:[+] chr17:27493724:27493753:[-] nonBSJ supported CDS

circRNA 5':CCAGUGUGCUGAUCUU--CUGACAUUCAGGUCUUCCA 3'


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target  3':AGUC-CACGUCCAGUCUCGGCGA-----CCGGU-GGA 5'

 -16.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866773:139866807:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC