Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865811:139865852:[+] chr4:7764517:7764567:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAGAAAUCCAGGU-----CUUCCAG-UCAGUCAG-UGUCU----UCCAGA 3'


            ||| :|| ||| || ||||| |||: ||:|: :|||:


target  3': CUUGUUUAAGG-CCUUGAACGAAGGGAAAGUUUCCUGACGGGACCGGGGUUC 5'

 -20.10 3 RIC-seq
chrX:139865811:139865882:[+] chr4:7764517:7764568:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAGAAAUCCAGGU-----CUUCCAG-UCAGUCAG-UGUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGUC 3'


            ||| :|| ||| || ||||| |||: ||:|:| :|||:|:


target  3': CUUGUUUAAGG-CCUUGAACGAAGGGAAAGUUUCCUGACGGGACCG------------------------GGGUUCG 5'

 -21.90 28 RIC-seq
chrX:139865815:139865874:[+] chr4:7764520:7764567:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAUCCAGGU-CUUCCAGUCAGUCAGUGUCUUCCAGAAAAAUCUAC-GUCUU--CCACCAAA 3'


            ||| ||| || || || ||||| || |:|:| || ||||


target  3':GUUUAAGG-CCUUGA-------------AC-GAAGGGAAAGUUUCCUGACGGGACCGG-GGUUC 5'

 -19.20 1 RIC-seq
chrX:139865815:139865882:[+] chr4:7764520:7764568:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAUCCAGGU-----CUUCCAG-UCAGUCAG-UGUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGUC 3'


            ||| ||| || ||||| |||: ||:|:| :|||:|:


target  3':GUUUAAGG-CCUUGAACGAAGGGAAAGUUUCCUGACGGGACCG------------------------GGGUUCG 5'

 -20.30 3 RIC-seq