Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865540:139865566:[+] chr2:153532950:153532985:[-] nonBSJ supported CDS

circRNA 5':AUCCAGU-----------CUUCCAGCAAUUACUGGUCU 3'


            |||||| |||||| || ||:||:


target  3':GAGGUCAUAAUGACCUAUGAAGGU-GUGAA--ACUAGGA 5'

 -19.30 1 RIC-seq
chrX:139865547:139865564:[+] chr2:153532949:153532965:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCAAUUACUGGU 3'


            |||||| ||||||||


target  3':AGAGGUCA-UAAUGACCU 5'

 -17.60 1 RIC-seq
chrX:139865547:139865568:[+] chr2:153532949:153532972:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCAAUUACUGGU--CUUC 3'


            |||||| |||||||| ||||


target  3':AGAGGUCA-UAAUGACCUAUGAAGG 5'

 -20.00 1 RIC-seq
chrX:139865547:139865590:[+] chr2:153532949:153532994:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCAAUUACUGGU--CUUCCAC-CAA--AUCCAGAUCUUCCAGG 3'


            |||||| |||||||| ||||||| | |||| || |||


target  3':AGAGGUCA-UAAUGACCUAUGAAGGUGUGAAACUAGGACUUAUC-GUC 5'

 -33.90 1 RIC-seq
chrX:139865547:139865591:[+] chr2:153532949:153532995:[-] nonBSJ supported CDS

circRNA 5':CUUCCAGCAAUUACUGGU--CUUCCAC-CAA--AUCCAGAUCUUCCAGGA 3'


            |||||| |||||||| ||||||| | |||| || ||||


target  3':AGAGGUCA-UAAUGACCUAUGAAGGUGUGAAACUAGGACUUAUC-GUCC 5'

 -37.00 14 RIC-seq