Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866524:139866549:[+] chr9:95051621:95051647:[-] nonBSJ supported 5UTR

circRNA 5': CAAGCCAUGUCU-UCCAGAAAAUCCAC 3'


            ||| || ||||:|| ||||


target  3':UGUUAAUUUAAGUCAGGUUUUG-AGGUU 5'

 -13.40 1 RIC-seq
chrX:139866524:139866559:[+] chr9:95051621:95051665:[-] nonBSJ supported 5UTR

circRNA 5': CAAGCCAUGUCU-UCCAGAAAAUCCACG------UCUUC--CAGA 3'


            ||| || ||||:|| |||| ||||| |||


target  3':UGUUAAUUUAAGUCAGGUUUUG-AGGUUCUAAAAGAGAAGAAGUCG 5'

 -17.80 1 RIC-seq
chrX:139866535:139866583:[+] chr9:95051613:95051666:[-] nonBSJ supported 5UTR

circRNA 5':UUCCAGAAAA-------------UCCACGUCUUCCAGAAAAUAUAUGUCUUCCAACUAAGCU 3'


            ||| ||||| |||| ||:| ||| ||||| |||


target  3': AGGACUUUUGUUAAUUUAAGUCAGGUUUUGAGGUUCUAAAAGAGA-AGAAG------UCGU 5'

 -18.50 1 RIC-seq
chrX:139866549:139866592:[+] chr9:95051609:95051660:[-] nonBSJ supported 5UTR

circRNA 5':CGUCUUCCAGAAAAUAUAUG---UCU-UCCAA----CUAAGCUACG-UCUUCC 3'


            |: |||| |||||:| || ||||| |:||| |||||


target  3': CGUAAGGACUUUUGUUAAUUUAAGUCAGGUUUUGAGGUUCUAAAAGAGAAGA 5'

 -22.40 16 RIC-seq
chrX:139866552:139866592:[+] chr9:95051611:95051660:[-] nonBSJ supported 5UTR

circRNA 5':CUUCCAGAAAAUAUAUG---UCU-UCCAA----CUAAGCUACG-UCUUCC 3'


            |||| |||||:| || ||||| |:||| |||||


target  3':UAAGGACUUUUGUUAAUUUAAGUCAGGUUUUGAGGUUCUAAAAGAGAAGA 5'

 -21.80 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866549:139866592:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC
chrX:139866552:139866592:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC