Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865337:139865373:[+] chr19:57036659:57036696:[+] nonBSJ supported CDS

circRNA 5':CAGGGUUUCCGAUGGCACCUGUGUC-AAGGUC-UUCCAA 3'


            | :|| ||||: |||:| |: ||||| |||||


target  3':AUGUCAUGCCCUACU-UGGGCUCGACUUCCAAAAAGGUG 5'

 -25.10 12 RIC-seq
chrX:139865337:139865376:[+] chr19:57036655:57036696:[+] nonBSJ supported CDS

circRNA 5':CAGGGUUUCCGAUGGCACCUGUGUC-AAGGUC-UUCCA-ACAA 3'


            | :|| ||||: |||:| |: ||||| ||||| |||


target  3':AUGUCAUGCCCUACU-UGGGCUCGACUUCCAAAAAGGUGUGUG 5'

 -26.50 12 RIC-seq
chrX:139865341:139865381:[+] chr19:57036714:57036751:[+] nonBSJ supported CDS

circRNA 5':GUUUCCGAUGGCACCUGUGUCA--------AGGUCUUCCAACAACUCCG 3'


            ||||| ||| |:|:||| |||| ||| ||||


target  3':GAAAGG-----GUGUAUAUAGUGUAAGUAUUCCA-AAGA-----GAGGA 5'

 -18.50 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr19:57036655:57036696:[+] target - chr19:57036678-57036679 G>A LICA-CN ICGC
chr19:57036659:57036696:[+] target - chr19:57036678-57036679 G>A LICA-CN ICGC