Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865755:139865776:[+] chr4:167654812:167654831:[-] nonBSJ supported 3UTR

circRNA 5': GUCAAUCAGUGUCUUCCAGAAA 3'


            |:||| |:||||| || ||


target  3':ACGGUU--UUACAGAU-GUGUUA 5'

 -13.40 15 RIC-seq
chrX:139865794:139865815:[+] chr4:167654812:167654831:[-] nonBSJ supported 3UTR

circRNA 5': GUCAAUCAGUGUCUUCCAGAAA 3'


            |:||| |:||||| || ||


target  3':ACGGUU--UUACAGAU-GUGUUA 5'

 -13.40 13 RIC-seq
chrX:139866189:139866231:[+] chr4:167675703:167675744:[-] nonBSJ supported CDS

circRNA 5':UAGCU-UCCAAAAAAUCCGGGUCUUCCAGGAAAUCC---GUGUCUUC 3'


            |:|| ||| ||| ||:||| :||:|||


target  3':UUUGACAGGAACAUACA---CAGU--GUUCUUAACUUCUUACGGAAC 5'

 -14.90 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:167675703:167675744:[-] target - chr4:167675739-167675740 G>T LICA-CN ICGC