Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866437:139866452:[+] chr12:46244307:46244323:[+] nonBSJ supported CDS

circRNA 5':GGUACGUCUUCC-AACA 3'


            |||| ||| || ||||


target  3':ACAUG-AGACGGUUUGUA 5'

 -11.20 1 RIC-seq
chrX:139866453:139866486:[+] chr12:46244238:46244271:[+] nonBSJ supported CDS

circRNA 5':AAGGUACGUCUUCCAACAAAGGUA--UGUCUU----CCAA 3'


            ||| |:|| |||| ||||:| |||


target  3':GUCCUCACGGAC------UUCCCUAGACAGGACCAUGGUG 5'

 -14.30 1 RIC-seq
chrX:139866453:139866496:[+] chr12:46244240:46244271:[+] nonBSJ supported CDS

circRNA 5':AAGGUACGUCUUCCAACAAAGGUA--UGUCUUCCAACAAAGGUACG 3'


            ||| |:|| |||| ||||:| |||||


target  3':GUCCUCACGGAC------UUCCCUAGACAGGA--------CCAUGG 5'

 -18.10 1 RIC-seq
chrX:139866455:139866483:[+] chr12:46244299:46244322:[+] nonBSJ supported CDS

circRNA 5':GGUACGUCUUCCAACAAAGGUAUGUCUUC 3'


            |||| ||| ||| || :|||| ||:


target  3': CAUG-AGACGGU---UUGUAUACUGAGA 5'

 -16.10 1 RIC-seq
chrX:139866455:139866483:[+] chr12:46244299:46244323:[+] nonBSJ supported CDS

circRNA 5':GGUACGUCUUCCAACAAAGGUAUGUCUUC 3'


            |||| ||| ||| || :|||| ||:


target  3':ACAUG-AGACGGU---UUGUAUACUGAGA 5'

 -17.50 21 RIC-seq
chrX:139866455:139866494:[+] chr12:46244289:46244323:[+] nonBSJ supported CDS

circRNA 5':GGUACGUCUUCCAACAAAGGUAUGUCUUCCAACAAAGGUA 3'


            |||| ||| ||| || :|||| ||: :|:


target  3':ACAUG-AGACGGU---UUGUAUACUGAGACACCCUGUCG 5'

 -18.70 1 RIC-seq
chrX:139866455:139866507:[+] chr12:46244280:46244323:[+] nonBSJ supported CDS

circRNA 5':GGUACGUCUUCCAACAAAGGUAUGUCUUCCAACAAAGGUACGUCUUCCAGAAA 3'


            |||| ||| ||| || :|||| ||: || ||: ||| |||


target  3':ACAUG-AGACGGU---UUGUAUACUGAGACAC----CC-UGUCGAACAACUUA 5'

 -19.70 23 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr12:46244280:46244323:[+] target 1684625 chr12:46244283-46244284 C>T Coffin-Siris_syndrome_6 ClinVar
chr12:46244280:46244323:[+] target 1170956 chr12:46244304-46244305 CAT>C Coffin-Siris_syndrome_6 ClinVar
chr12:46244289:46244323:[+] target 1170956 chr12:46244304-46244305 CAT>C Coffin-Siris_syndrome_6 ClinVar
chr12:46244299:46244322:[+] target 1170956 chr12:46244304-46244305 CAT>C Coffin-Siris_syndrome_6 ClinVar
chr12:46244299:46244323:[+] target 1170956 chr12:46244304-46244305 CAT>C Coffin-Siris_syndrome_6 ClinVar
chr12:46244280:46244323:[+] target - chr12:46244298-46244299 C>T LINC-JP ICGC
chr12:46244289:46244323:[+] target - chr12:46244298-46244299 C>T LINC-JP ICGC