Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865823:139865889:[+] chr9:140151329:140151375:[+] nonBSJ supported CDS

circRNA 5':AGGUCUUCCAGUCAGUCAGUGUCUU-CCAGAAAAAUCUA-CGUCUUCCACCAAAUCCA-GGUCUUCCAGU 3'


            ||:|| |||||| ||||| ||| || ||| |||| |||| ||: |||


target  3':CCCGGACCA----------ACAGAACGGUCU----AGACGGC-GAA-GUGG---AGGUGCCGC---GUC 5'

 -35.60 1 RIC-seq
chrX:139865855:139865889:[+] chr9:140151329:140151356:[+] nonBSJ supported CDS

circRNA 5':AAUCUA-CGUCUUCCACCAAAUCCA-GGUCUUCCAGU 3'


            |||| || ||| |||| |||| ||: |||


target  3':CUAGACGGC-GAA-GUGG---AGGUGCCGC---GUC 5'

 -19.50 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:140151329:140151356:[+] target - chr9:140151336-140151337 G>T LICA-CN ICGC
chr9:140151329:140151375:[+] target - chr9:140151336-140151337 G>T LICA-CN ICGC