Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865855:139865888:[+] chr17:73164177:73164213:[-] nonBSJ supported 3UTR

circRNA 5':AAUCUACGUCUUCCACCAAAUCCAGGUCUU------CCAG 3'


            |||: |||| ||||| ::|| |||


target  3': UAGG-GCAG-AGGUGAACUACAGUUAGUUUUGUAUGGUA 5'

 -17.30 1 RIC-seq
chrX:139865855:139865899:[+] chr17:73164177:73164209:[-] nonBSJ supported 3UTR

circRNA 5':AAUCUACGUCUUCCACCAAAUCCAGGUCUUCCAGUCAAUCC--ACAU 3'


            |||: |||| ||||| ||||||| ||||


target  3': UAGG-GCAG-AGGUGAACUA------------CAGUUAGUUUUGUAU 5'

 -21.10 1 RIC-seq
chrX:139865855:139865900:[+] chr17:73164177:73164209:[-] nonBSJ supported 3UTR

circRNA 5':AAUCUACGUCUUCCACCAAAUCCAGGUCUUCCAGUCAAUCC--ACAUC 3'


            |||: |||| ||||| ||||||| ||||


target  3': UAGG-GCAG-AGGUGAACUA------------CAGUUAGUUUUGUAU 5'

 -21.40 1 RIC-seq
chrX:139865855:139865907:[+] chr17:73164177:73164217:[-] nonBSJ supported 3UTR

circRNA 5':AAUCUACGUCUUCCACCAAAUCCAGGUCUUCCAGUCAAUCC--ACAU-CUUCCGGA 3'


            |||: |||| ||||| ||||||| |||| |: ||


target  3': UAGG-GCAG-AGGUGAACUA------------CAGUUAGUUUUGUAUGGUAACCG 5'

 -24.60 5 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139865855:139865907:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC