Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865507:139865540:[+] chr9:91939612:91939639:[+] nonBSJ supported Intron

circRNA 5':CCAAGUCUUCCAGUAAAUCAAGUCUUCCAGCAAA 3'


            |||:| ||||| :||||||||||


target  3':UGUUUA-----UCAUUGGAGGAGGAAGGUCGUU 5'

 -22.00 1 RIC-seq
chrX:139865517:139865540:[+] chr9:91939612:91939633:[+] nonBSJ supported Intron

circRNA 5':CAGUAAAUCAAGUCUUCCAGCAAA 3'


            ||||| :||||||||||


target  3': UCAUUGGAGGAGGAAGGUCGUU 5'

 -20.80 18 RIC-seq
chrX:139865534:139865556:[+] chr9:91939612:91939631:[+] nonBSJ supported Intron

circRNA 5':CAGCAAAUCCAGUCUUCCAGCAA 3'


            |:| ||| :|||||||||


target  3':AUUGG--AGGA-GGAAGGUCGUU 5'

 -20.30 1 RIC-seq
chrX:139865534:139865557:[+] chr9:91939612:91939631:[+] nonBSJ supported Intron

circRNA 5':CAGCAAAUCCAGUCUUCCAGCAAU 3'


            |:| ||| :||||||||||


target  3':AUUGG--AGGA-GGAAGGUCGUU 5'

 -20.80 5 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:91939612:91939631:[+] target - chr9:91939625-91939626 G>A PRAD-CA ICGC
chr9:91939612:91939633:[+] target - chr9:91939625-91939626 G>A PRAD-CA ICGC
chr9:91939612:91939639:[+] target - chr9:91939625-91939626 G>A PRAD-CA ICGC