Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865658:139865696:[+] chr16:9024151:9024184:[-] nonBSJ supported 5UTR

circRNA 5':UUCCAGCUAAUCCAUGUCUUCCAGAAAAAUC-UGUGUCUU 3'


            ||| ||||||||:||| ||||||:


target  3':UAGG------AGGUACAGGAGGAGGCGCCACAACACAGGU 5'

 -29.60 2 RIC-seq
chrX:139865358:139865395:[+] chr16:8995956:8996005:[-] nonBSJ supported CDS

circRNA 5':UGUCAAGGUC-UUCCAA-------CAACUCCGGGUC------UUCCAGCGAC 3'


            || |||||| :|||| || ||| ||:|| |||||| ||


target  3':CCA-UUCCAGCGAGGUGAUCGUCGGUCGAGCCCUAGUUGACAAAGGUC-CUU 5'

 -29.40 1 RIC-seq
chrX:139866316:139866356:[+] chr16:8995964:8996014:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCGAAAAAU-CCAGGUC------------UUCCAGGAAAUCCGUGUCUU 3'


            || |||: |||| || ||||||||| ||||:


target  3':GCG-AGGUGAUCGUCGGUCGAGCCCUAGUUGACAAAGGUCCUUAUA--ACAGGU 5'

 -30.60 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866316:139866356:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC