Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866562:139866576:[+] chr11:103191812:103191826:[+] nonBSJ supported CDS

circRNA 5':AUAUAUGUCUUCCAA 3'


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target  3':GAUAUGCAGGAGGUA 5'

 -18.10 14 RIC-seq
chrX:139866562:139866576:[+] chr11:103191813:103191826:[+] nonBSJ supported CDS

circRNA 5':AUAUAUGUCUUCCAA 3'


            ||||:|||:||||


target  3':GAUAUGCAGGAGGU 5'

 -18.10 2 RIC-seq
chrX:139866562:139866614:[+] chr11:103191773:103191826:[+] nonBSJ supported CDS

circRNA 5':AUAUAUGUCUUCCAACUAAGCUA-CGUCUUCCAACAAAUCCAUGU-C---UUCCUAUA 3'


            ||||:|||:|||| |||: || |:| ||| ||| |||||| | ||||:||


target  3':GAUAUGCAGGAGGU--AUUU-AUCGUAAAAGUUCAUUU-GGUACAUGUUUAAGGGUAA 5'

 -32.50 21 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:103191773:103191826:[+] target 2829353 chr11:103191794-103191795 T>A Jeune_thoracic_dystrophy ClinVar
chrX:139866562:139866614:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC