Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865752:139865791:[+] chr12:76447573:76447630:[-] nonBSJ supported CDS

circRNA 5': CCAGUCA-----------AUCAGUGUCUUC-----CAGAAAGAAAUCCAG---GUCUUC 3'


            ||| ||| ||||| :|| || | || |||| |||||


target  3':AGGU-AGUUUUCUUUUCCCUAGUCUUAGUAGACCAAGACUGGAG-UAGGACAUACAGAAA 5'

 -17.00 5 RIC-seq
chrX:139865752:139865810:[+] chr12:76447573:76447642:[-] nonBSJ supported CDS

circRNA 5': CCAGUCA-----------AUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCA-GUCAA--UCAGUGUCUUCC 3'


            ||| ||| ||||| :|| || || :||:| ||| ||||:: ||||


target  3':AGGU-AGUUUUCUUUUCCCUAGUCUUAGUAGACCAAGACU--GGAGUAGGACAUACAGAAACAGUCGU-GAAGU 5'

 -26.80 8 RIC-seq
chrX:139865791:139865813:[+] chr12:76447611:76447636:[-] nonBSJ supported CDS

circRNA 5': CCA-GUCAAUCAGUGUCUUC--CAGA 3'


            || :|| :|||||| |||


target  3':UGGAGUAGGACA-UACAGAAACAGUCG 5'

 -12.40 1 RIC-seq
chrX:139865791:139865830:[+] chr12:76447573:76447630:[-] nonBSJ supported CDS

circRNA 5': CCAGUCA-----------AUCAGUGUCUUC-----CAGAAAGAAAUCCAG---GUCUUC 3'


            ||| ||| ||||| :|| || | || |||| |||||


target  3':AGGU-AGUUUUCUUUUCCCUAGUCUUAGUAGACCAAGACUGGAG-UAGGACAUACAGAAA 5'

 -17.00 2 RIC-seq
chrX:139866130:139866146:[+] chr12:76443432:76443446:[-] nonBSJ supported Intron

circRNA 5':CUCCAGGUCUUCCAGAC 3'


            ||||::|| ||||


target  3':AGGGUUUAGU--GUCUU 5'

 -12.70 2 RIC-seq
chrX:139866130:139866177:[+] chr12:76443432:76443478:[-] nonBSJ supported Intron

circRNA 5':CUCCAGGUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUC-UUC 3'


            ||||::|| |||| ||: | ||| |: ||| |||


target  3':AGGGUUUAGU--GUCUUACUAAUAUCGUUUC-CUUAUGUAUUCAGUAAGU 5'

 -13.50 14 RIC-seq
chrX:139866130:139866178:[+] chr12:76443432:76443478:[-] nonBSJ supported Intron

circRNA 5':CUCCAGGUCUUCCAGACUAUCCAUGUCUUCCAGAAAAUCCUUGUC-UUCC 3'


            ||||::|| |||| ||: | ||| |: ||| |||


target  3':AGGGUUUAGU--GUCUUACUAAUAUCGUUUC-CUUAUGUAUUCAGUAAGU 5'

 -14.30 8 RIC-seq
chrX:139866146:139866193:[+] chr12:76443429:76443457:[-] nonBSJ supported Intron

circRNA 5':CUAUCCAU-GUCUUCCAGAAAAUCCUUGUCUUCCCUUAAAUCUAUAGCU 3'


            ||||| :|| ||||| ||||||


target  3':AAUAGGGUUUAGU--GUCUUACUA------------------AUAUCGU 5'

 -13.50 24 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr12:76443432:76443478:[-] target - chr12:76443467-76443468 A>G LAML-KR ICGC