Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866769:139866807:[+] chr18:32833585:32833629:[-] nonBSJ supported CDS

circRNA 5':GUCUCCAGUGUGCUGAUCUUCUGACAUUCA--------GGUCUUCCA 3'


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target  3':GAGAGGUCACACUUA-AGAA-ACUACAAGUUAUUCCUAUCUUGAGGA 5'

 -28.70 1 RIC-seq
chrX:139866805:139866826:[+] chr18:32833504:32833524:[-] nonBSJ supported CDS

circRNA 5': CCAGUGUCUGCAAUAUCCAGGU 3'


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target  3':AGGUCACACUUAAG--AGA-CCAC 5'

 -11.90 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866769:139866807:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC