Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865438:139865465:[+] chr7:82595348:82595377:[-] nonBSJ supported CDS

circRNA 5':AGCUUCCA-GAAAAUCCACA--UCUUCCAGA 3'


            ||:|| || |||| |||


target  3':ACGGAGACCCUCAUCGAAAAACAGAA-GUCC 5'

 -9.50 1 RIC-seq
chrX:139865472:139865498:[+] chr7:82595347:82595375:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCA--UGUCUUCC 3'


            ||:||: ||| |||||||


target  3':AACGGAGACCCUCAUCGAAAAACAGAAGU 5'

 -16.50 2 RIC-seq
chrX:139865472:139865507:[+] chr7:82595347:82595386:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCA--UGUCUUCCAAGAA--GCUC 3'


            ||:||: ||| ||||||| |||


target  3':AACGGAGACCCUCAUCGAAAAACAGAAGUCCCCAACCGAA 5'

 -17.30 2 RIC-seq
chrX:139865472:139865515:[+] chr7:82595347:82595393:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCA--UGUCUUCCAAGAA--GCUCCAAGUCUU 3'


            ||:||: ||| ||||||| ||| |||


target  3':AACGGAGACCCUCAUCGAAAAACAGAAGUCCCCAACCGAAAAAAAGA 5'

 -18.10 2 RIC-seq
chrX:139865472:139865516:[+] chr7:82595347:82595394:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCGGACAAUCCA--UGUCUUCCAAGAA--GCUCCAAGUCUUC 3'


            ||:||: ||| ||||||| ||| ||||


target  3':AACGGAGACCCUCAUCGAAAAACAGAAGUCCCCAACCGAAAAAAAGAA 5'

 -19.00 35 RIC-seq
chrX:139865490:139865520:[+] chr7:82595347:82595377:[-] nonBSJ supported CDS

circRNA 5':AUGUCUUCCA-AGAAGCUCCAAGUCUUCCAGU 3'


            ||:||: || |||| ||||| |||


target  3':AACGGAGACCCUCAUCGAAAAACAGAA-GUCC 5'

 -18.50 2 RIC-seq
chrX:139865858:139865882:[+] chr7:82585037:82585062:[-] nonBSJ supported CDS

circRNA 5': CUAC-GUCUUCCACCAAAUCCAGGUC 3'


            |||| ||| || || ||:||


target  3':CGAUGACAGUGACAGGAGUA-GUUCAC 5'

 -12.40 53 RIC-seq
chrX:139865861:139865882:[+] chr7:82585042:82585062:[-] nonBSJ supported CDS

circRNA 5':CGUCUUCCACCAAAUCCAGGUC 3'


            ||| || || ||:||


target  3':ACAGUGACAGGAGUA-GUUCAC 5'

 -9.30 1 RIC-seq
chrX:139866318:139866360:[+] chr7:82470782:82470818:[-] nonBSJ supported CDS

circRNA 5':CUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUCUUCCAG 3'


            |||| ||| || ||: ||:| ||| ||||


target  3':AGAGGACA-UUAA--CCUACUC-UCUGUUGGAAACA--AGGUA 5'

 -12.00 7 RIC-seq
chrX:139866370:139866398:[+] chr7:82470781:82470820:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAA------------AGCCA-UGUCUUCCAUCA 3'


            |||:| |:|| ||| ||||||


target  3':AAGAGGACAUUAACCUACUCUCUGUUGGAAACA--AGGUAGC 5'

 -14.00 7 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr7:82470781:82470820:[-] target 3594915 chr7:82470816-82470817 C>CA Pontocerebellar_hypoplasia_type_3 ClinVar
chr7:82470782:82470818:[-] target 3594915 chr7:82470816-82470817 C>CA Pontocerebellar_hypoplasia_type_3 ClinVar
chr7:82470781:82470820:[-] target - chr7:82470813-82470814 T>C BTCA-JP ICGC
chr7:82470781:82470820:[-] target - chr7:82470820-82470821 G>T LICA-CN ICGC
chr7:82470782:82470818:[-] target - chr7:82470813-82470814 T>C BTCA-JP ICGC