Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866083:139866143:[+] chr4:760602:760648:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCAAAAAAGCCAUGU-CUUCCAGAAAAUCCACAUCUUCCAAUGGCCUCCAGGUCUUCCA 3'


            |||| ||:||| |: || || ||||: |||||| ||||| ||


target  3':CAAGGCA--UUUGGU-CGUGAC--UCGACCA-GUGUG--------CCGGAGA-CCAGAUGGA 5'

 -33.20 1 RIC-seq
chrX:139866101:139866143:[+] chr4:760602:760648:[+] nonBSJ supported 3UTR

circRNA 5':CUUCCAGAAAAUCCA-CAU----CU--UCCAAUGGCCUCCAGGUCUUCCA 3'


            |||| | ||| ||| ||: || || |:|||||| ||||| ||


target  3':CAAGG-CAUUU-GGUCGUGACUCGACCAGUGUGCCGGAGA-CCAGAUGGA 5'

 -31.20 1 RIC-seq
chrX:139865762:139865771:[+] chr4:759818:759827:[+] nonBSJ supported CDS

circRNA 5':AGUGUCUUCC 3'


            |:|:||||


target  3':CCGCGGAAGA 5'

 -11.20 2 RIC-seq