Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139866767:139866816:[+]	chr19:8468328:8468402:[+]	nonBSJ supported	CDS	circRNA 5':ACGUCUCCAGUG-------UGCUGAUCUUCUGACAUUCAGGUCUUC----------------CAGU---GUCUGCA 3' \|\|\|\|: \|\|\| :\|\|\|\|\|\| \|\|: \|\|: \|\|::\| \|\|\|: \|\|\|\|\|\| target 3':GGCAGGCACCACCCGCCGUGCGACUAC-AGGUGGUGCAACAAGGGGCCCCUGAGCAGCACCCGUCGCGCCAGACGC 5'	-34.50	1	RIC-seq
chrX:139866796:139866827:[+]	chr19:8468408:8468440:[+]	nonBSJ supported	CDS	circRNA 5':UCAGG-UCUUCCAGUGUCUGCAAUAUCCA-GGUA 3' \|\|\|\| \|\|\| \|\|\|:: \|\|\|\|\| \|\|: target 3':UGUCCAAGACCGUCGU-GACGUCGAACAACCCGA 5'	-22.00	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chrX:139866767:139866816:[+]	circRNA	-	chrX:139866793-139866794	C>T	LICA-CN	ICGC