Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865377:139865392:[+] chr1:51061806:51061822:[-] nonBSJ supported CDS

circRNA 5':CUCCGGGUCUUC-CAGC 3'


            ||||||||| |||


target  3':AGGGCCCAGACACGUCC 5'

 -18.50 16 RIC-seq
chrX:139866442:139866483:[+] chr1:50941301:50941334:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAAAGGUACGUCUUCCAACAAAGGUAUGUCUUC 3'


            |||||| ||: || || ||: || ||:


target  3':AAGAAGGAAA---CCG---AGUCCUCCGUC-CCGAAC-GAGA 5'

 -13.30 1 RIC-seq
chrX:139866442:139866493:[+] chr1:50941301:50941338:[-] nonBSJ supported CDS

circRNA 5':GUCUUCCAACAA---AGGUACGUCUUCCAACAAAGGUAUGUCUUCCAACAAAGGU 3'


            |||||| ||| |||:| | ||| | ||||


target  3':AAGAAGGAAACCGAGUCC---------------UCCGUCCCGAACGA-GAUUCC 5'

 -15.00 6 RIC-seq
chrX:139866653:139866704:[+] chr1:51210356:51210395:[-] nonBSJ supported CDS

circRNA 5':UGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUCCAGCA 3'


            ||| ||||||| |||||||| ||||||||||| ||||


target  3': UGA-CAGAAGG-UGUAGAGG-GCAGAAGGUCGGAAAAUU-------GUCG 5'

 -52.30 2 RIC-seq
chrX:139866653:139866705:[+] chr1:51210356:51210396:[-] nonBSJ supported CDS

circRNA 5':UGCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUCUCUGUGUCUUCCAGCAU 3'


            ||| ||||||| |||||||| ||||||||||| |||||


target  3': UGA-CAGAAGG-UGUAGAGG-GCAGAAGGUCGGAAAAUU-------GUCGU 5'

 -52.80 7 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:51210356:51210395:[-] target - chr1:51210358-51210359 T>A RECA-EU ICGC
chr1:51210356:51210396:[-] target - chr1:51210358-51210359 T>A RECA-EU ICGC