Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866404:139866436:[+] chr7:110848048:110848075:[-] nonBSJ supported Intron

circRNA 5':AUGUCUUCCAGCCUACUUGUGUCUUCCAACAAA 3'


            |||||||| ||||| ||: |||: |||


target  3': ACAGAAGGA-GGAUG-ACG-AGAGUCAAGUU 5'

 -23.70 1 RIC-seq
chrX:139866404:139866468:[+] chr7:110848048:110848112:[-] nonBSJ supported Intron

circRNA 5':AUGUCUUCCAGCCUACUUGUGUCUUCCAACAAAGGUACGUCUUCC-AACAAAGGUACGU---CUUCCAA 3'


            |||||||| ||||| ||: |||: ||||:| | :|| || |||||| ||||||


target  3': ACAGAAGGA-GGAUG-ACG-AGAGUCAAGUUUUCUGGGGGAUGGUUUGUUUGAUAAUAAUCGAAGGUC 5'

 -47.60 1 RIC-seq
chrX:139866679:139866715:[+] chr7:110832795:110832830:[-] nonBSJ supported Intron

circRNA 5':UUCCAGCAUCUCUGUGUCUUCCA-GCAUCUUCAU-GUCU 3'


            ||||: |||: :|| :||


target  3':CGGGUUCUCU---CACGUUUCAUGUGUUUCUCUUCUAGU 5'

 -7.40 2 RIC-seq