Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866189:139866234:[+] chr21:46225612:46225670:[-] nonBSJ supported 3UTR

circRNA 5':UAGCUUCCAAAAA----AUCCGGGUCUUC--------CAGGAAAUCCGUGUCUUCCAG 3'


            |||: |||| |:|||:|:|: |||||||| |||


target  3':CUCGGUUGUUUGUAGGGUGGGCUCGGGUAUGUCGUUUGUCCUUUACUCUUGUAAAGUCG 5'

 -26.90 1 RIC-seq
chrX:139866189:139866238:[+] chr21:46225612:46225672:[-] nonBSJ supported 3UTR

circRNA 5':UAGCUUCCAAAAA----AUCCGGGUCUUC--------CAGGAAAUCCGUGUCUUCCAGCAAG 3'


            |||: |||| |:|||:|:|: |||||||| ||||||


target  3':CUCGGUUGUUUGUAGGGUGGGCUCGGGUAUGUCGUUUGUCCUUUACUCUUGUAAAGUCGUU 5'

 -33.40 1 RIC-seq
chrX:139866189:139866239:[+] chr21:46225612:46225673:[-] nonBSJ supported 3UTR

circRNA 5':UAGCUUCCAAAAA----AUCCGGGUCUUC--------CAGGAAAUCCGUGUCUUCCAGCAAGU 3'


            |||: |||| |:|||:|:|: |||||||| |||||||


target  3':CUCGGUUGUUUGUAGGGUGGGCUCGGGUAUGUCGUUUGUCCUUUACUCUUGUAAAGUCGUUC 5'

 -35.80 3 RIC-seq
chrX:139866189:139866239:[+] chr21:46225612:46225674:[-] nonBSJ supported 3UTR

circRNA 5':UAGCUUCCAAAAA----AUCCGGGUCUUC--------CAGGAAAUCCGUGUCUUCCAGCAAGU 3'


            |||: |||| |:|||:|:|: |||||||| |||||||


target  3':CUCGGUUGUUUGUAGGGUGGGCUCGGGUAUGUCGUUUGUCCUUUACUCUUGUAAAGUCGUUCU 5'

 -35.90 12 RIC-seq