Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866668:139866700:[+] chr6:27835075:27835110:[-] nonBSJ supported CDS

circRNA 5':AUCUCCACGUCUU--CCAGCA-UCUCUGU-GUCUUCC 3'


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target  3':AAGAGGUGCAGCAUCGGUGGCCGGCGAUUCCGGAAG 5'

 -30.90 3 RIC-seq
chrX:139866668:139866701:[+] chr6:27835075:27835107:[-] nonBSJ supported CDS

circRNA 5':AUCUCCACGUCUUCCAG-CAUCU-CUGUGUCUUCCA 3'


            |||||||||| || ||:| |:|: ||


target  3':AAGAGGUGCAGCA--UCGGUGGCCGGCGAUUCCGG 5'

 -27.10 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr6:27835075:27835110:[-] target - chr6:27835110-27835111 C>A PACA-CA ICGC