Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866510:139866555:[+] chr11:120097155:120097190:[+] nonBSJ supported Intron

circRNA 5':CCACGU-C-UUCCAACCAAGCCAUGUCUUCCAGAAAAUCCACGUCUUC 3'


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target  3':AGUGCAUGAAAGGUUGU-----------AGGUCCCUU-GGUUCAGGGA 5'

 -27.90 2 RIC-seq
chrX:139866636:139866653:[+] chr11:120086038:120086057:[+] nonBSJ supported Intron

circRNA 5': CCAGGGCUUCCAG---CAUCU 3'


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target  3':UGGACCC-AAGAAAACAGUGG 5'

 -10.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr11:120097155:120097190:[+] target - chr11:120097175-120097176 G>A LAML-KR ICGC