Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866254:139866301:[+] chr17:79477393:79477453:[-] nonBSJ supported 3UTR

circRNA 5':AAAGCCA------UGUCUUCCAGACUAUCCAUG-UCUU-------CCA-GAAAAU-CCUUGUCU 3'


            |||||| ||||||||| | ||:| |||| ||| ||| || |:|


target  3':GUUCGGUGUCUGAACAGAAGGUGUUC---GUGCAAGAAUGGAAUCGGUGCUUCACUGGUUCGGU 5'

 -33.20 2 RIC-seq
chrX:139866566:139866625:[+] chr17:79477405:79477453:[-] nonBSJ supported 3UTR

circRNA 5':AUGUCUUCCAACUAAGCUACG-UCUU-CCAACAAAUCCAUGUCUUCCUAUAUCUCCAGGUCU 3'


            ||||||||| :|||| ||| |||| || |||:| |||:|:|


target  3':AACAGAAGGU--GUUCG-UGCAAGAAUGGAAUC---GGUGCUUCACU-------GGUUCGGU 5'

 -38.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866566:139866625:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC