Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865582:139865621:[+] chr17:79477407:79477453:[-] nonBSJ supported 3UTR

circRNA 5': UCUUCCAGGAAAAUCCACG-UCUU-------CCAGGAAAU--CCAUGUCU 3'


            ||||||| :| |||| |||| ||| ||| ||| |:|


target  3':CAGAAGGUGUUC----GUGCAAGAAUGGAAUCGGUGCUUCACUGGUUCGGU 5'

 -28.00 2 RIC-seq
chrX:139865690:139865746:[+] chr17:79477406:79477463:[-] nonBSJ supported 3UTR

circRNA 5':GUGUCUUCCACCAAAUCCAAGUCUU-CC--AGUAAAUCUAGUU-CUU--CCAGAAAAAUCUAG 3'


            |||||||||| |||| || ||: |: ||| |: ||| | |||


target  3': ACAGAAGGUGUUCGUGCA--AGAAUGGAAUCGG-UGCUUCACUGGUUCGGUGUGCAU-GAUU 5'

 -25.50 1 RIC-seq
chrX:139865690:139865747:[+] chr17:79477406:79477465:[-] nonBSJ supported 3UTR

circRNA 5':GUGUCUUCCACCAAAUCCAAGUCUU-CC--AGUAAAUCUAGUU-CUU--CCAGAAAAAUCUAGA 3'


            |||||||||| |||| || ||: |: ||| |: ||| | |||:|


target  3': ACAGAAGGUGUUCGUGCA--AGAAUGGAAUCGG-UGCUUCACUGGUUCGGUGUGCAU-GAUUUC 5'

 -26.50 1 RIC-seq
chrX:139865879:139865905:[+] chr17:79477406:79477431:[-] nonBSJ supported 3UTR

circRNA 5':GGUCUUCCAGUCAAUCCACA-UCUU-CCG 3'


            |||||||| ||| ||| |||| ||


target  3':ACAGAAGGU--GUUC-GUGCAAGAAUGGA 5'

 -19.40 2 RIC-seq
chrX:139866377:139866400:[+] chr17:79477390:79477418:[-] nonBSJ supported 3UTR

circRNA 5':AACAAAGCCA------UGUCUUCCAUCAAA 3'


            || |||||| ||||||||| |||


target  3':GUGGUUCGGUGUCUGAACAGAAGGU-GUUC 5'

 -23.30 2 RIC-seq
chrX:139866691:139866722:[+] chr17:79477161:79477186:[-] nonBSJ supported 3UTR

circRNA 5':UGUGUCUUCCAGCAUCUUCAUGUCUUCCAACA 3'


            |:|| ||| :| ||||||||


target  3':CCGCAUUUA--CGUUUG---GC-GAAGGUUGA 5'

 -16.30 2 RIC-seq
chrX:139865782:139865807:[+] chr17:79478460:79478483:[-] nonBSJ supported CDS

circRNA 5':CCAGGUCUUCCAGUCAAUCAGUGUCU 3'


            |||||| || |:|| :||| |||:


target  3':AGUCCAG--GGCCGGUCGGUC-CAGGU 5'

 -25.30 2 RIC-seq
chrX:139866580:139866613:[+] chr17:79479032:79479058:[-] nonBSJ supported CDS

circRNA 5':AGCUACGUCUUCCAACAAAUCCAUGUCUUCCUAU 3'


            ||:| :||||| |||||||| |||:|


target  3':ACGGUCUAGAAG-------AGGUACAGCAGGGUC 5'

 -29.60 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr17:79478460:79478483:[-] target 505063 chr17:79478468-79478469 C>T Baraitser-winter_syndrome_2|Autosomal_dominant_nonsyndromic_hearing_loss_20|not_specified|not_provided ClinVar
chr17:79478460:79478483:[-] target 197198 chr17:79478474-79478475 G>A Inborn_genetic_diseases|not_provided|Autosomal_dominant_nonsyndromic_hearing_loss_20 ClinVar
chr17:79479032:79479058:[-] target - chr17:79479034-79479035 C>T BTCA-JP ICGC
chrX:139865879:139865905:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC
chrX:139866580:139866613:[+] circRNA - chrX:139866592-139866593 C>A LICA-CN ICGC