Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866284:139866320:[+] chr1:76936026:76936076:[+] nonBSJ supported Intron

circRNA 5':UCCAGAAAAUCCUUGUC--UUCCCUCA-------------AAUCCA-UAGCUU 3'


            |||| || |:|| ||||| |||||| |||||


target  3':CGGUCAGAU-GGUAUAGUAAAGGGUAAGGGUCUACAGAUGUUAGGUAAUCGA 5'

 -25.70 1 RIC-seq
chrX:139866619:139866668:[+] chr1:76584881:76584919:[+] nonBSJ supported Intron

circRNA 5':CAGGUCUUCCAGCAUCUCCAGGGCUUCCAGCAUCUG-CUCGUCUUCCAACA 3'


            ||||| ||| ||||| ||||||||| || |: |||


target  3':AUCCAG--GGU--------UCCCG--GGUCGUAGAAAGACCGUUAUUUUGA 5'

 -33.20 2 RIC-seq
chrX:139866740:139866794:[+] chr1:76650872:76650914:[+] nonBSJ supported Intron

circRNA 5':CAACUGG-CUCAAUAUCCAUGUCUUCCAACGUCUCCAGUGUGCU-GAUCUUC-UGACA 3'


            |||||: ||||| ||||| |::|| ||| ||||


target  3':UUUGACUAGAGUUU----UACAGCUCUU-----------CGUGAUCUAUUGCAACUGG 5'

 -19.60 2 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:76936026:76936076:[+] target - chr1:76936028-76936029 C>T RECA-EU ICGC
chrX:139866284:139866320:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866740:139866794:[+] circRNA - chrX:139866793-139866794 C>T LICA-CN ICGC