Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865906:139865929:[+] chr22:39258422:39258447:[-] nonBSJ supported 3UTR

circRNA 5':GAAAAAAUCCAGGUCUUCCA-----GCCA 3'


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target  3':GUUUGGUAGGGGCAG--GGUUUCUCCGG 5'

 -15.10 20 RIC-seq
chrX:139865992:139866018:[+] chr22:39261297:39261337:[-] nonBSJ supported 3UTR

circRNA 5': CUUCC--AGU-AACCU-----CCC-AGUCU----UCCAGA 3'


            ||||| ||: ||||| ||| ||:|| :||||


target  3':UGAAGGUGUCGUUUGGAGGUCUGGGUUCGGACCAGGGGUCC 5'

 -26.70 8 RIC-seq
chrX:139866196:139866217:[+] chr22:39258421:39258441:[-] nonBSJ supported 3UTR

circRNA 5': CAAAAAAUCCGGGUCUUCCAGG 3'


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target  3':AGUUUGGUAGGGGCAG--GGUUU 5'

 -14.00 1 RIC-seq