Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866629:139866683:[+] chr3:128997791:128997837:[+] nonBSJ supported 5UTR

circRNA 5':AGCAUCUCCAGGGCUUCCAGCAUCUGC-UCGUCUUCCAACAUCUCCACGUCUUCCA 3'


            || ||:|| || |||| || || ||| ||||| ||:|| | :||:||


target  3':ACG-AGGGGA---GACAGUCG-AG-CGCAGC-GAAGGAA--AGGGGAGGGGAGGGG 5'

 -43.60 1 RIC-seq
chrX:139866629:139866686:[+] chr3:128997787:128997837:[+] nonBSJ supported 5UTR

circRNA 5':AGCAUCUCCAGGGCUUCCAGCAUCUGC-UCGUCUUCCAACA-UCUCCACGUCUUCCAGCA 3'


            || ||:|| || |||| || || ||| ||||| :|||| | ||::| ||


target  3':ACG-AGGGGA---GACAGUCG-AG-CGCAGC-GAAGGAAAGGGGAGG-GGAGGGGAGCG 5'

 -45.50 1 RIC-seq
chrX:139866627:139866692:[+] chr3:128997762:128997825:[+] nonBSJ supported Intron

circRNA 5':CCAGCAUCUCCAGGGCUUCCAGCAUCUGCUCGUCUUCCAA---CAUCUCCACGUCUUCCAGCAUCUCUG 3'


            |||| || | |||||| ||: ||| :||:|| ||| :|| || |: || || || |:


target  3':AGUCG-AGCGCAG-CGAAGGAA--AGGGGAGGGGAGGGGAGCGGUAUGGG-GCUGGCGGGCGCAGCGGA 5'

 -50.60 2 RIC-seq