Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865688:139865700:[+] chr9:5968656:5968669:[-] nonBSJ supported CDS

circRNA 5': CUGUGUCUUCCAC 3'


            ||:||| :||||


target  3':AGAUACAAGAGGUA 5'

 -12.40 1 RIC-seq
chrX:139865689:139865712:[+] chr9:5969227:5969253:[-] nonBSJ supported CDS

circRNA 5':UGUGUCUUCCACCAAA--UCCAAGUC 3'


            |::|| ||| ||||| ||


target  3':CCGUAGUCUUCUGUUGCAAGGUUAAGC 5'

 -9.40 1 RIC-seq
chrX:139865689:139865719:[+] chr9:6007505:6007533:[-] nonBSJ supported CDS

circRNA 5':UGUGUCUUCCACCAAAUCCAAGUCUUCCAGU 3'


            ||| |||| || || || :||||


target  3':CCAC-GAAGA-GGACGUCCUUGAGCGGGUCC 5'

 -16.60 9 RIC-seq
chrX:139865761:139865832:[+] chr9:5954047:5954097:[-] nonBSJ supported CDS

circRNA 5': CAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGAAAUCCAGGUCUUCCA 3'


            |||| |||| ||||| || ||| ||| ||||


target  3':UGUCAA--AAGG---------------AGAAGAAACACUA---AC-GAAAAAAUCUCUGCCUAAAAA-AAGGA 5'

 -11.60 4 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr9:5969227:5969253:[-] target - chr9:5969249-5969250 A>G LAML-KR ICGC
chr9:6007505:6007533:[-] target - chr9:6007520-6007521 G>A LAML-KR ICGC