Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865468:139865518:[+] chr19:49496936:49496968:[+] nonBSJ supported 5UTR

circRNA 5':AUCCAUGUCUUCCGGACAAUCCAUGUCUUCCAAGAAGCUCCAAGUCUUCCA 3'


            ||||| |:||: ||||||:| ||||| ||:|||


target  3':CAGGUA---AGGGU--------UACAGAGGAC----CGAGG---AGGAGGA 5'

 -30.30 3 RIC-seq
chrX:139865468:139865518:[+] chr19:49496936:49496974:[+] nonBSJ supported 5UTR

circRNA 5':AUCCAUGUCUUCCGGACAAUCC-AUGUCUUCCAAGAAGCUCCAAGUCUUCCA 3'


            ||| || |||: :|| ||||||:| ||||| ||:|||


target  3': AGG-ACCC-AGGUAA---GGGUUACAGAGGAC----CGAGG---AGGAGGA 5'

 -32.20 18 RIC-seq
chrX:139865490:139865518:[+] chr19:49496936:49496958:[+] nonBSJ supported 5UTR

circRNA 5': AUGUCUUCCAAGAAGCUCCAAGUCUUCCA 3'


            ||||||:| ||||| ||:|||


target  3':UUACAGAGGAC----CGAGG---AGGAGGA 5'

 -23.30 1 RIC-seq