Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866634:139866655:[+] chr4:88813919:88813946:[+] nonBSJ supported Exon

circRNA 5': CU-CC-AG-GG-CUU-CCAG-CAUCUGC 3'


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target  3':UGACGGUUCACCAGAAGGGUCAGU-GACC 5'

 -17.40 1 RIC-seq
chrX:139866634:139866673:[+] chr4:88813887:88813946:[+] nonBSJ supported Exon

circRNA 5': CU-CC-AG-GG-CUU-CCAG-CAUCU------GCUCGUC-------UUCCA-ACAUCUCC 3'


            || || || || ||| |||| || || |||| :|||| || :|||


target  3':UGACGGUUCACCAGAAGGGUCAGU-GACCACUCCGAGAAUAUCUUAAGAGGUAUGAGGAGA 5'

 -26.20 3 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr4:88813887:88813946:[+] target - chr4:88813908-88813909 T>C LAML-KR ICGC
chr4:88813887:88813946:[+] target - chr4:88813920-88813921 C>T LAML-KR ICGC
chr4:88813887:88813946:[+] target - chr4:88813922-88813923 G>A LAML-KR ICGC
chr4:88813919:88813946:[+] target - chr4:88813920-88813921 C>T LAML-KR ICGC
chr4:88813919:88813946:[+] target - chr4:88813922-88813923 G>A LAML-KR ICGC