Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866214:139866244:[+] chr5:148998555:148998594:[+] nonBSJ supported CDS

circRNA 5': CAGGAAA----UC-CG-UG-UCUUCCAGCA-AGUC-CACG 3'


            |||| || :| || || |||| |||| |||| |||


target  3':GGUCCAUUCGUCGGUGCAACAAGAA-GUCGAGUCAGUGUGU 5'

 -23.80 8 RIC-seq
chrX:139866215:139866244:[+] chr5:148998555:148998589:[+] nonBSJ supported CDS

circRNA 5': AGGAAAUC-CG-UG-UCUUCCAGCA-AGUC-CACG 3'


            |:| :| || || |||| |||| |||| |||


target  3':AUUCGUCGGUGCAACAAGAA-GUCGAGUCAGUGUGU 5'

 -20.90 1 RIC-seq
chrX:139866220:139866244:[+] chr5:148998555:148998583:[+] nonBSJ supported CDS

circRNA 5':AUC-CG-UG-UCUUCCAGCA-AGUC-CACG 3'


            || || || |||| |||| |||| |||


target  3':CGGUGCAACAAGAA-GUCGAGUCAGUGUGU 5'

 -20.00 1 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr5:148998555:148998583:[+] target - chr5:148998582-148998583 G>A LICA-CN ICGC
chr5:148998555:148998589:[+] target - chr5:148998582-148998583 G>A LICA-CN ICGC
chr5:148998555:148998594:[+] target - chr5:148998582-148998583 G>A LICA-CN ICGC