Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865750:139865768:[+] chr2:40657267:40657289:[-] nonBSJ supported CDS

circRNA 5':UUCCAGU-CA---AUCAGUGUCU 3'


            |||||| || |:|||| ||


target  3':UAGGUCAUGUAAGUGGUCAAAGU 5'

 -15.80 1 RIC-seq
chrX:139865750:139865772:[+] chr2:40657267:40657295:[-] nonBSJ supported CDS

circRNA 5':UUCCAGU-CA---AUCAGUGUC--UUCCA 3'


            |||||| || |:|||| || ||||


target  3':UAGGUCAUGUAAGUGGUCAAAGUAAAGGA 5'

 -19.40 19 RIC-seq
chrX:139865780:139865808:[+] chr2:40657029:40657050:[-] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUC-CAGUCAAUCAGUGUCUU 3'


            |||||:||:|| |||| |||||


target  3':AAGGUCUAGGAGUGUCA-------ACAGA 5'

 -25.20 1 RIC-seq
chrX:139865780:139865809:[+] chr2:40657029:40657051:[-] nonBSJ supported CDS

circRNA 5':AUCCAGGUCUUC-CAGUCAAUCAGUGUCUUC 3'


            |||||:||:|| |||| ||||||


target  3':AAGGUCUAGGAGUGUCA-------ACAGAA 5'

 -26.10 15 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr2:40657029:40657050:[-] target - chr2:40657031-40657032 C>T LINC-JP ICGC
chr2:40657029:40657051:[-] target - chr2:40657031-40657032 C>T LINC-JP ICGC