Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866287:139866300:[+] chr1:240939022:240939035:[-] nonBSJ supported 3UTR

circRNA 5':AGAAAAUCCUUGUC 3'


            |||| :|||


target  3':ACUUUGAAAGACAC 5'

 -3.70 1 RIC-seq
chrX:139866296:139866346:[+] chr1:240938994:240939041:[-] nonBSJ supported 3UTR

circRNA 5':UUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAA 3'


            ||| ||| ||:| |||| ||| ||||


target  3': ACA-AAGACUGACACUGUGUAACCA-CUUUACUUUGAAAGACACGCCUUA 5'

 -8.80 1 RIC-seq
chrX:139866296:139866354:[+] chr1:240938994:240939049:[-] nonBSJ supported 3UTR

circRNA 5':UUGUCUUCCCUCAAAUCCAUAGCUUCCGAAAAAUCCAGGUCUUCCAGGAAAUCCGUGUC 3'


            ||| ||| ||:| |||| ||| |||| |||


target  3': ACA-AAGACUGACACUGUGUAACCA-CUUUACUUUGAAAGACACGCCUUAAAUAACAA 5'

 -9.90 30 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr1:240938994:240939041:[-] target - chr1:240939005-240939006 G>T LICA-CN ICGC
chr1:240938994:240939049:[-] target - chr1:240939005-240939006 G>T LICA-CN ICGC
chrX:139866296:139866346:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866296:139866354:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC