Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865600:139865625:[+] chr21:38555159:38555185:[+] nonBSJ supported CDS

circRNA 5':GUCUUC--CAG-GAAAUCCAUGUCUUCCA 3'


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target  3':AAGAAGAAGUCACUAAAAU--CAGAAAGA 5'

 -11.20 25 RIC-seq
chrX:139865600:139865634:[+] chr21:38555150:38555185:[+] nonBSJ supported CDS

circRNA 5':GUCUUC--CAG-GAAAUCCAUGUCUUCCAAUAAUUUCA 3'


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target  3':AAGAAGAAGUCACUAAAAU--CAGAAAGAACCUAAAGA 5'

 -13.60 1 RIC-seq
chrX:139866141:139866157:[+] chr21:38563653:38563667:[+] nonBSJ supported CDS

circRNA 5':CCAGACUAUCCAUGUCU 3'


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target  3':AGUCUG--AGGUACAGU 5'

 -19.70 20 RIC-seq
chrX:139866267:139866283:[+] chr21:38563653:38563667:[+] nonBSJ supported CDS

circRNA 5':CCAGACUAUCCAUGUCU 3'


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target  3':AGUCUG--AGGUACAGU 5'

 -19.70 5 RIC-seq
chrX:139866637:139866686:[+] chr21:38560836:38560870:[+] nonBSJ supported CDS

circRNA 5':CAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCAC-GUCUUCCAGCA 3'


            |:|||| |||||| || ||||| :||| |||


target  3':UUUCCGA-------AGACGAACACU--------GAGGUACUAGACA-UCGA 5'

 -24.30 17 RIC-seq
chrX:139866637:139866686:[+] chr21:38560837:38560870:[+] nonBSJ supported CDS

circRNA 5':CAGGGCUUCCAGCAUCUGCUCGUCUUCCAACAUCUCCAC-GUCUUCCAGCA 3'


            |:|||| |||||| || ||||| :||| |||


target  3':UUUCCGA-------AGACGAACACU--------GAGGUACUAGACA-UCG 5'

 -24.50 1 RIC-seq
chrX:139866638:139866688:[+] chr21:38507700:38507737:[+] nonBSJ supported CDS

circRNA 5':AGGGCUUCC-AG-CAUCUGCUCGUCUUCCAACAUCUCCACGUCUUC-CAGCAUC 3'


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target  3': UCCGGUAUAUCGGUAGAACUUAAUU--------------C-GAAGAGUCGUAA 5'

 -21.60 4 RIC-seq