5'UTR
CDS
3'UTR
Exon
circRNA binding site
| CircRNA interaction region | Target interaction region | Interaction type | Target element | RNA duplex | MFE (kcal/mol) | Reads | Methods |
| chrX:139865578:139865619:[+] | chr2:3504611:3504651:[-] | nonBSJ supported | CDS |
circRNA 5':CAGAUCUUC-CA-GGAAAAU--CCACGUCUUCCAGGAAAUCCAUGU 3' |||||::| | ||| ||| ||||:|| |||||| target 3': UCUAGGGGCGCCCCUCGCAGUGGUACAGAGGGAAG---AGGUAC 5' |
-31.60 | 14 | RIC-seq |
| chrX:139865579:139865619:[+] | chr2:3504612:3504651:[-] | nonBSJ supported | CDS |
circRNA 5':AGAUCUUC-CA-GGAAAAU--CCACGUCUUCCAGGAAAUCCAUGU 3' ||||::| | ||| ||| ||||:|| |||||| target 3': CUAGGGGCGCCCCUCGCAGUGGUACAGAGGGAAG---AGGUAC 5' |
-29.90 | 1 | RIC-seq |
| chrX:139866331:139866369:[+] | chr2:3504611:3504649:[-] | nonBSJ supported | CDS |
circRNA 5':CAGGUCUUC-CA-GGAAAU---CCGUGUCUUCCAGCAAAUCCAC 3' ||:||::| | ||| ||:|||||:|| |||| target 3': UCUAGGGGCGCCCCUCGCAGUGGUACAGAGGGAAG---AGGU 5' |
-30.70 | 1 | RIC-seq |
| chrX:139866331:139866389:[+] | chr2:3504611:3504651:[-] | nonBSJ supported | CDS |
circRNA 5':CAGGUCUUC-CA-GGAAAUCCGUGUCUUCCAGCAAAUCCACGUCUUCCAACAAAGCCAUGU 3' ||:||::| | ||| |:||| ||| ||||:|| ||||| target 3': UCUAGGGGCGCCCCU-----CGCAGU----------GGUACAGAGGGAAGA---GGUAC 5' |
-31.00 | 19 | RIC-seq |