Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865654:139865677:[+] chr20:52107912:52107941:[+] nonBSJ supported 3UTR

circRNA 5':GAUCU-----UCCAGCU-AAUCCAUGUCUU 3'


            |||| ||||||| |||| |||||


target  3':AUAGAGAAAGAGGUCGAGUUAGAAACAGAU 5'

 -21.30 2 RIC-seq
chrX:139865654:139865682:[+] chr20:52107907:52107941:[+] nonBSJ supported 3UTR

circRNA 5':GAUCU-----UCCAGCU-AAUCCAUGUCUUCCAGA 3'


            |||| ||||||| |||| ||||| ||


target  3':AUAGAGAAAGAGGUCGAGUUAGAAACAGAUUUUCA 5'

 -21.70 26 RIC-seq
chrX:139865755:139865769:[+] chr20:52107912:52107925:[+] nonBSJ supported 3UTR

circRNA 5':GUCAAUCAGUGUCUU 3'


            |||||| |||||


target  3': AGUUAGAAACAGAU 5'

 -11.90 5 RIC-seq
chrX:139866311:139866352:[+] chr20:52105114:52105154:[+] nonBSJ supported 3UTR

circRNA 5':UCCAUAGCUUCCGAAAAAU---CCAGGUCUUCCAGGAAAUCCGUG 3'


            |||||||| ||| ||| :| |||||: |||:


target  3':UGGUAUCGACUCAUCGUUAAAUGGUGUAUUAGGUCU-----GCAUA 5'

 -25.40 1 RIC-seq
chrX:139866311:139866354:[+] chr20:52105113:52105154:[+] nonBSJ supported 3UTR

circRNA 5':UCCAUAGCUUCCGAAAAAU---CCAGGUCUUCCAGGAAAUCCGUGUC 3'


            |||||||| ||| ||| :| |||||: |||:|


target  3':UGGUAUCGACUCAUCGUUAAAUGGUGUAUUAGGUCU-----GCAUAA 5'

 -27.20 3 RIC-seq
chrX:139866311:139866355:[+] chr20:52105109:52105154:[+] nonBSJ supported 3UTR

circRNA 5':UCCAUAGCUUCCGAAAAAU---CCAGGUCUUCCAGGAAAUCCGUGUCU 3'


            |||||||| ||| ||| :| |||||: ||||


target  3':UGGUAUCGACUCAUCGUUAAAUGGUGUAUUAGGUCUGCAUAA-ACAG 5'

 -29.20 4 RIC-seq
chrX:139866311:139866356:[+] chr20:52105108:52105154:[+] nonBSJ supported 3UTR

circRNA 5':UCCAUAGCUUCCGAAAAAU---CCAGGUCUUCCAGGAAAUCCGUGUCUU 3'


            |||||||| ||| ||| :| |||||: ||||:


target  3':UGGUAUCGACUCAUCGUUAAAUGGUGUAUUAGGUCUGCAUAA-ACAGG 5'

 -29.70 25 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chrX:139866311:139866352:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866311:139866354:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866311:139866355:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC
chrX:139866311:139866356:[+] circRNA - chrX:139866318-139866319 C>T BTCA-JP ICGC