Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865724:139865772:[+] chr15:99675208:99675258:[+] nonBSJ supported 3UTR

circRNA 5':CUAG-UUCUUC-CAGAAAAAUCUAGAUCU-UCCAGUCAAUCAG---------UGUCUUCCA 3'


            ||| :||:|| | |:|| ||| ||| ||| ||||| |||| ||


target  3': AUCUGAGGAGUGGU------GGUC-AGACAGGACAG-UAGUCUGUCCUCCGACAGU-GGA 5'

 -26.40 2 RIC-seq
chrX:139865724:139865775:[+] chr15:99675199:99675258:[+] nonBSJ supported 3UTR

circRNA 5':CUAG-UUCUUC-CAGAAAAAUCUAGAUCU-UCCAGUCAAUCAG---------UGUCUU-----CCAGAA 3'


            ||| :||:|| | |:|| ||| ||| ||| ||||| |||| |||:|


target  3': AUCUGAGGAGUGGU------GGUC-AGACAGGACAG-UAGUCUGUCCUCCGACAGUGGAACUGGUUUA 5'

 -26.50 28 RIC-seq
chrX:139865724:139865778:[+] chr15:99675221:99675258:[+] nonBSJ supported 3UTR

circRNA 5':CUAG-UUCUUCCAGAAAAAUCUAGAUCUUCCAGUCAAUCAGUGUCUUCCAGAAAGA 3'


            ||| :||:|| |:| |||||| || |||| | |||| ||


target  3': AUCUGAGGAG-------------UGGU-GGUCAGACAGG-ACAGUA-GUCUGUC 5'

 -24.70 1 RIC-seq