Gene structure and interaction sites

5'UTR

CDS

3'UTR

Exon

circRNA binding site

Detailed information

CircRNA interaction region	Target interaction region	Interaction type	Target element	RNA duplex	MFE (kcal/mol)	Reads	Methods
chrX:139865380:139865406:[+]	chr7:5413712:5413740:[-]	nonBSJ supported	CDS	circRNA 5':CGGGUCUUCCAG---CGACUUCAAGUCUUC 3' \|\|\| \|\|\|\|\| \|:\|\|\|:\|\|\|\|\|\|\|\| target 3':CCCC-GAAGGAAGAGGUUGAGGUUCAGAAA 5'	-31.70	2	RIC-seq
chrX:139865936:139865997:[+]	chr7:5396659:5396721:[-]	nonBSJ supported	CDS	circRNA 5':GUCUUC-CUGA----------AGAU---CCAC-GUCUU---CCAGAAAAUCCAUGUCUUCCAGAAAAUCCAUG-UCUUCCA 3' \|\|\|\|\| \|\|\| \|\|\|: \|\| \|:\|:\| \|\|\|\| :\|:\|\|\|\|\| \|\| \|\|\|\|\|\| target 3':UGGAAGAGACCUCCUAAAGUCUCUGUCCGGCUCCGGGAACCGGUC--------GCGGAAGG----------ACAAGAAGGG 5'	-30.10	1	RIC-seq
chrX:139865936:139866001:[+]	chr7:5396659:5396727:[-]	nonBSJ supported	CDS	circRNA 5':GUCUUC-CUGA----------AGAU---CCAC-GUCUU---CCAGAAAA-UCCAUG-UCUUCCAGAAAAUCCAUGUCUUCCAGUAA 3' \|\|\|\|\| \|\|\| \|\|\|: \|\| \|:\|:\| \|\|\|\| \|\|\| \|\| \|\|\|\|\|\| \|\|\|\|:\| target 3':UGGAAGAGACCUCCUAAAGUCUCUGUCCGGCUCCGGGAACCGGUCGCGGAAGG-ACAAGAAGG----------------GGUCGUC 5'	-32.40	1	RIC-seq

Variants map to interaction

Interaction region	CircRNA/target	Mutation ID	Position	Variant	Associated trait	Resource
chr7:5396659:5396721:[-]	target	-	chr7:5396715-5396716	T>C	LAML-KR	ICGC
chr7:5396659:5396727:[-]	target	-	chr7:5396715-5396716	T>C	LAML-KR	ICGC