Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139866189:139866214:[+] chr3:128993684:128993700:[+] nonBSJ supported CDS

circRNA 5': UAGCUUCCAAAAAAUCCGGGUCUUCC 3'


            ||:|| |||:|:|||||


target  3':CAUUGA---------AGGUCUAGAAG 5'

 -17.30 1 RIC-seq
chrX:139866189:139866215:[+] chr3:128993683:128993700:[+] nonBSJ supported CDS

circRNA 5': UAGCUUCCAAAAAAUCCGGGUCUUCCA 3'


            ||:|| |||:|:||||||


target  3':CAUUGA---------AGGUCUAGAAGG 5'

 -21.50 16 RIC-seq
chrX:139866202:139866215:[+] chr3:128993683:128993695:[+] nonBSJ supported CDS

circRNA 5':AUCCGGGUCUUCCA 3'


            |||:|:||||||


target  3':AAGGUCUAGAAGG 5'

 -21.10 1 RIC-seq