Gene structure and interaction sites

 5'UTR

 CDS

 3'UTR

 Exon

 circRNA binding site

Detailed information
CircRNA interaction region Target interaction region Interaction type Target element RNA duplex MFE (kcal/mol) Reads Methods
chrX:139865833:139865881:[+] chr3:114173442:114173474:[-] nonBSJ supported 5UTR

circRNA 5':GUCAGUCAGU-GUCUUCCAGAAAAAUCUACGUCUUCCACCAAAUCCAGGU 3'


            |||||||| || :||| |||| ||||


target  3': AGUCAGUCCUCAAGAGGAAAAG---------------GGUUCU-GUCCC 5'

 -22.10 13 RIC-seq
chrX:139865876:139865919:[+] chr3:114173446:114173474:[-] nonBSJ supported 5UTR

circRNA 5':CCAGGUCUUCCAGUCAAUCCACAUCUUCC-GGAAAAAAUCCAGGU 3'


            |||| ||| ||| |:|| :|| ||||


target  3':AGUCCUCAAG-------AGGAAA--AGGGUUCU-------GUCCC 5'

 -15.30 2 RIC-seq
chrX:139865337:139865372:[+] chr3:114069476:114069527:[-] nonBSJ supported CDS

circRNA 5':CAGGGUUUCCGA-UGGC----------------ACCUGUGUCAA-GGUCUUCCA 3'


            |||||||| | |||| || || | ||| ||: :||


target  3':CUCCCAAAGACAGACCGCAUUCAUCUCGACCCAUGAAC-C-GUUACCGACGGGC 5'

 -24.10 1 RIC-seq
chrX:139865337:139865395:[+] chr3:114069476:114069518:[-] nonBSJ supported CDS

circRNA 5':CAGGGUUUCCGA-UGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGU-CUUCCAGCGAC 3'


            |||||||| | |||| ||: ||: || |||| ||| ||:|


target  3':CUCCCAAAGACAGACCG----CAUUCAUCUCGA------------CCCAUGAAC--CGUUA 5'

 -26.80 2 RIC-seq
chrX:139865337:139865405:[+] chr3:114069476:114069527:[-] nonBSJ supported CDS

circRNA 5':CAGGGUUUCCGA-UGGCACCUGUGUCAAGGUCUUCCAACAACUCCGGGU-CUUCCAGCGACUUCAAGUCUU 3'


            |||||||| | |||| ||: ||: || |||| ||| ||:| |:|:


target  3':CUCCCAAAGACAGACCG----CAUUCAUCUCGA------------CCCAUGAAC--CGUUACCGA-CGGGC 5'

 -29.00 33 RIC-seq
chrX:139866648:139866705:[+] chr3:114069807:114069859:[-] nonBSJ supported CDS

circRNA 5':GCAUCU----GCUCGUCUUCCAACAUCUCCACGUCUUCCAGCAUC-UCUGUGUCUUCCA-GCAU 3'


            ||:|| |||| || |||| |:|:|| || |||||||||||| |||


target  3':AGUGGAAACCCGAG--------UG-AGAGCCACGGGAGC-CGGACCAGACACAGAAGGCACGU 5'

 -43.40 29 RIC-seq
Variants map to interaction
Interaction region CircRNA/target Mutation ID Position Variant Associated trait Resource
chr3:114069476:114069518:[-] target 2664812 chr3:114069493-114069494 G>GT Primrose_syndrome ClinVar
chr3:114069476:114069518:[-] target 3544374 chr3:114069496-114069497 A>ACTAC Primrose_syndrome ClinVar
chr3:114069476:114069518:[-] target 2229580 chr3:114069512-114069513 T>TG Inborn_genetic_diseases ClinVar
chr3:114069476:114069527:[-] target 2664812 chr3:114069493-114069494 G>GT Primrose_syndrome ClinVar
chr3:114069476:114069527:[-] target 3544374 chr3:114069496-114069497 A>ACTAC Primrose_syndrome ClinVar
chr3:114069476:114069527:[-] target 2229580 chr3:114069512-114069513 T>TG Inborn_genetic_diseases ClinVar
chrX:139865876:139865919:[+] circRNA - chrX:139865903-139865904 C>T LINC-JP ICGC